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elxEulerStackTransform.h
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1 /*=========================================================================
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3  * Copyright UMC Utrecht and contributors
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5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
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9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 #ifndef __elxEulerStackTransform_h
19 #define __elxEulerStackTransform_h
20 
21 #include "elxIncludes.h"
24 #include "itkStackTransform.h"
25 #include "itkEulerTransform.h"
26 
27 namespace elastix
28 {
29 
80 template< class TElastix >
83  typename elx::TransformBase< TElastix >::CoordRepType,
84  elx::TransformBase< TElastix >::FixedImageDimension >,
85  public elx::TransformBase< TElastix >
86 {
87 public:
88 
95  typedef itk::SmartPointer< Self > Pointer;
96  typedef itk::SmartPointer< const Self > ConstPointer;
97 
99  itkNewMacro( Self );
100 
103 
108  elxClassNameMacro( "EulerStackTransform" );
109 
111  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
112  itkStaticConstMacro( ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1 );
113 
117  typedef itk::EulerTransform<
119  itkGetStaticConstMacro( SpaceDimension ) > EulerTransformType;
122 
124  typedef itk::EulerTransform<
126  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionEulerTransformType;
128 
131 
133  typedef itk::StackTransform<
135  itkGetStaticConstMacro( SpaceDimension ),
136  itkGetStaticConstMacro( SpaceDimension ) > EulerStackTransformType;
138 
142 
155 
157  typedef float PixelType;
158  typedef itk::Image< PixelType,
159  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionImageType;
160  typedef itk::ImageRegion<
161  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionRegionType;
162  typedef typename ReducedDimensionImageType::PointType ReducedDimensionPointType;
163  typedef typename ReducedDimensionImageType::SizeType ReducedDimensionSizeType;
164  typedef typename ReducedDimensionRegionType::IndexType ReducedDimensionIndexType;
165  typedef typename ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType;
166  typedef typename ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType;
167  typedef typename ReducedDimensionImageType::PointType ReducedDimensionOriginType;
168 
171 
173  typedef typename FixedImageType::IndexType IndexType;
174  typedef typename FixedImageType::SizeType SizeType;
175  typedef typename FixedImageType::PointType PointType;
176  typedef typename FixedImageType::SpacingType SpacingType;
177  typedef typename FixedImageType::RegionType RegionType;
178  typedef typename FixedImageType::DirectionType DirectionType;
179  typedef typename itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType;
180  typedef typename itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType;
181 
184  int BeforeAll( void ) override;
185 
191  void BeforeRegistration( void ) override;
192 
194  virtual void InitializeTransform( void );
195 
203  virtual void SetScales( void );
204 
206  void ReadFromFile( void ) override;
207 
209  void WriteToFile( const ParametersType & param ) const override;
210 
213 
214 protected:
215 
218 
220  ~EulerStackTransform() override {}
221 
227  virtual bool ReadCenterOfRotationPoint( ReducedDimensionInputPointType & rotationPoint ) const;
228 
229 private:
230 
232  EulerStackTransform( const Self & ); // purposely not implemented
233  void operator=( const Self & ); // purposely not implemented
234 
237 
240 
244 
246  unsigned int InitializeEulerTransform();
247 
248 };
249 
250 
251 } // end namespace elastix
252 
253 #ifndef ITK_MANUAL_INSTANTIATION
254 #include "elxEulerStackTransform.hxx"
255 #endif
256 
257 #endif // end #ifndef __elxEulerStackTransform_h
A class that deals with user given parameters and command line arguments.
A stack transform based on the itk EulerTransforms.
ReducedDimensionEulerTransformType::OutputVectorType ReducedDimensionOutputVectorType
ReducedDimensionEulerTransformPointer m_EulerDummySubTransform
Superclass1::ParametersType ParametersType
virtual bool ReadCenterOfRotationPoint(ReducedDimensionInputPointType &rotationPoint) const
Superclass2::ConfigurationType ConfigurationType
ReducedDimensionImageType::SizeType ReducedDimensionSizeType
itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension) > EulerTransformType
FixedImageType::SpacingType SpacingType
itk::ImageRegion< itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionRegionType
Superclass2::FixedImageType FixedImageType
Superclass2::ElastixType ElastixType
void BeforeRegistration(void) override
ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType
EulerTransformType::InputPointType InputPointType
EulerStackTransform(const Self &)
FixedImageType::DirectionType DirectionType
itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType
Superclass2::MovingImageType MovingImageType
EulerTransformType::Pointer EulerTransformPointer
Superclass1::NumberOfParametersType NumberOfParametersType
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Superclass2::RegistrationType RegistrationType
itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionEulerTransformType
itk::Image< PixelType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionImageType
virtual void SetScales(void)
itk::SmartPointer< const Self > ConstPointer
virtual void InitializeTransform(void)
virtual void InitialTransformCenter(ReducedDimensionInputPointType &point)
ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType
void WriteToFile(const ParametersType &param) const override
FixedImageType::IndexType IndexType
Superclass2::ITKBaseType ITKBaseType
Superclass2::CoordRepType CoordRepType
EulerStackTransformType::Pointer EulerStackTransformPointer
FixedImageType::RegionType RegionType
void ReadFromFile(void) override
elx::TransformBase< TElastix > Superclass2
itk::SmartPointer< Self > Pointer
Superclass2::ScalesType ScalesType
Superclass2::ConfigurationPointer ConfigurationPointer
elxClassNameMacro("EulerStackTransform")
ReducedDimensionEulerTransformType::InputPointType ReducedDimensionInputPointType
ReducedDimensionEulerTransformType::Pointer ReducedDimensionEulerTransformPointer
itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType
FixedImageType::SizeType SizeType
itk::StackTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension) > EulerStackTransformType
ReducedDimensionImageType::PointType ReducedDimensionOriginType
Superclass2::RegistrationPointer RegistrationPointer
int BeforeAll(void) override
FixedImageType::PointType PointType
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
unsigned int InitializeEulerTransform()
void operator=(const Self &)
Superclass2::CombinationTransformType CombinationTransformType
ReducedDimensionRegionType::IndexType ReducedDimensionIndexType
ReducedDimensionImageType::PointType ReducedDimensionPointType
Superclass2::ElastixPointer ElastixPointer
itkStaticConstMacro(ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
EulerStackTransformPointer m_EulerStackTransform
This class is the elastix base class for all Transforms.
Configuration::Pointer ConfigurationPointer
ElastixType::FixedImageType FixedImageType
itk::WeakPointer< ElastixType > ElastixPointer
OptimizerType::ScalesType ScalesType
RegistrationType * RegistrationPointer
ElastixType::MovingImageType MovingImageType
ElastixType::CoordRepType CoordRepType
ElastixType::RegistrationBaseType RegistrationType
This class combines two transforms: an 'initial transform' with a 'current transform'.
Superclass::NumberOfParametersType NumberOfParametersType
Transform maps points, vectors and covariant vectors from an input space to an output space.
Superclass::ParametersType ParametersType
This class combines the Euler2DTransform with the Euler3DTransform.
Superclass::InputPointType InputPointType
Superclass::OutputVectorType OutputVectorType
SmartPointer< Self > Pointer
Implements stack of transforms: one for every last dimension index.
SmartPointer< Self > Pointer


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